Like this......
PHOTO
MDW
OHARE
If this is how it looks like from inside the Scenery Libray menu in FS9, that's not a good arrangement, because Photoreal sceneries should be usually placed at a lower level than airports.
If, instead, this is the order of the scenery.cfg file, note that it's also important the Layer number and the Area number. Our installer automatically puts OHare as the topmost scenery, so it should appear on top in the Scenery Library menu, unless you move it, or install something else.
However, we tested the scenery with FT KMDW, and found no issues, except for the fact that our installer renames (and informs you of this) the FT's kord_tweak.bgl file, that is not needed anymore, but if it's active excludes lots of ground objects at KORD.