I cannot help you with the alignment, since the numbers don't tell me anything, it's way easier if you just do them visually in the editor.
However, you surely made a mistake, by setting the first cargo door with a 0 code, which means you said it's a door that use the default code for the main passenger doors, which is surely wrong, both because it's the main passenger door, and because Captain Sim usually have custom XML variables, like the one for the 2nd cargo door.
Try to Reset the configuration, so the one that comes with GSX will take over, and try again.