it only happens with the wilco airbus evolution.
In your 3rd screenshot, it seems the airplane is raised above ground. And, I see a suspicious value in your door's height, which reads 6.01 mt, which is definitely too high for an A340. The likely issue, considering it only happens with that airplane, is that it has wrong contact points and/or wrong static_cg height position, so the airplane is not resting on ground.
If you don't want to touch the airplane config file, you might just trying to guess how much the height is wrong, and lower your door by that amount, until you find the correct value when the airplane is working normally (outside the editor), since you already set the lateral and longitudinal coordinates for all doors, you only need to fix the heights and, once you find a corrective value, it will be the same for all doors so, assuming the airplane is wrong by 1 meter, just put every door 1 meter below the indicated height, and it should work.