Herbie,
The AoA Indicator lights should disappear (light goes out) with gear up, or flash with hook up (hook bypass carrier). The AoA is showing correctly in your picture, did you mean the meatball disappeared on the IFLOLS gauge, it looks like you are too high in the first picture and the meatball is not showing on the IFLOLS, and would result in a wave off. Looks like the carrier is flashing a wave off due to being too high with respect to glideslope.
I always fly with rad alt around the carrier as per NATOPS. Think baro would give similar altitude over the ocean. The altitude window is not blank, just flashing when below rad alt setting, and when you took the pic it was flashing off.
Not sure about the carrier lights, you could try dawn or twilight to get the lights.
-Capt