If GSX finds a profile which contained a custom texture ( possible only with P3D V4 ), it will remove it from the profile to prevent errors caused by that livery variation not being found, with a comment saying what it did.
The problem was caused by MILLENNIUM_BANK being present as a texture, but not in the rules_jetway_logo.cfg file, so it's treated as a custom texture, even if it's not.
Run the FSDT Live Update now, to get the fixed rules_jetway_logo.cfg file.