The problem doesn't have anything to do with GSX.
The black screen at start is normal, if you reinstalled P3D, since it will take a couple of minutes to recreate its shaders and the screen will be black during that time. This IS normal, but it should only last 1-2 minutes, depending on how fast is your system. Yes, of course, if your system is taxed down by too many addons, slow hard drives, antivirus, etc, those 1-2 minutes might be more.
You should remove EVERY instance of Prepar3d.exe in the registry, and if they come back, that's NOT normal either.