Are any other customers having this issue (especially in P3Dv2.4)? I'd be very curious to know...
Nobody has reported it before, which means it doesn't seem to be a big issue for most of the users. In addition to that, there are some posts on LM site from other developers reporting slightly misplaced ground scenery with their products, WITH P3D ONLY so no, it's not something that happens with just KFLL, more likely you don't have other sceneries that have this issue.
Interesting enough, CYVR and KIAH are made using an entirely different method, and rely more on our custom modules to do and position everything, while KFLL is a bit more "standard SDK", although it's no 100% FSX native code, and I guess this might have something to do with it, because support for pre-FSX stuff in P3D is decreasing over time, with each new version.
Do you have FSX installed too ? If yes, try to compare if it looks more correct in FSX.
We'll eventually have to remake all our past sceneries that are not 100% FSX code like we did for JFK, and this includes KFLL, but we don't have a timeline for this right now.